* fix(tests): root-cause two master test-infra flakes
gateway.test.ts: add afterAll(resetGateway) hook. The file's tests use
beforeEach(resetGateway) for per-test isolation, but the FINAL test was
leaving configureGateway({env: {OPENAI_API_KEY: 'openai-fake'}}) in the
gateway module state. Sibling files in the same bun shard (e.g.
test/ingestion/ingest-capture.test.ts) then triggered embed() against
the real OpenAI endpoint with the leaked fake key, wedging the shard
with 'Incorrect API key provided: openai-fake'.
header-transport.test.ts → .serial.test.ts: the file mutates RECIPES
(gateway's module-scoped recipe map) plus configureGateway, then asserts
fakeChatFetch was invoked. Under bun's intra-shard parallelism, sibling
files like test/ai/rerank.test.ts race the same state — chat would see
result.text === '[]' instead of 'ok' because another test called
resetGateway between this test's configureGateway and chat. Quarantining
as .serial.test.ts moves the file into the post-parallel serial pass
at --max-concurrency=1 per repo convention.
* refactor(doctor): extract buildChecks seam + behavioral coverage
src/commands/doctor.ts: extract buildChecks(engine, args, dbSource):
Promise<Check[]> from runDoctor. The check-building logic moves into
the new exported function; existing exported computeDoctorReport(checks)
at line 78 stays untouched. runDoctor becomes a thin wrapper:
buildChecks → computeDoctorReport → render + process.exit. All 10
process.exit sites stay in place. The two early-return paths drop
their inline outputResults+process.exit calls and return the partial
check list; the wrapper still produces identical observable output.
test/doctor-behavioral.test.ts (13 cases): pure pure-aggregation cases
pin computeDoctorReport math (3 fails → -60 points, score clamped at 0,
mixed outcome → unhealthy with fail dominating). Orchestrator cases
assert --fast flag honors the skip set, --json doesn't alter the list,
no-engine path returns partial without process.exit, and the snapshot
of load-bearing check names catches accidental drop-outs during
future refactors.
test/doctor-cli-smoke.serial.test.ts (1 case): subprocess smoke spawning
'bun run src/cli.ts doctor --json' against a fresh PGLite tempdir brain.
Catches render-path bugs that buildChecks-only tests miss — the class
the v0.38.2.0 partial-scan wave exposed. Quarantined as .serial because
PGLite write-locks don't play well with parallel runners; skippable via
GBRAIN_SKIP_SUBPROCESS_TESTS=1.
* feat(operations): trust-boundary contract test + filter-bypass shell guard
test/operations-trust-boundary.test.ts (14 cases): hybrid design per
plan D7. Pure assertions over all 74 ops cover the drift-detection
win (every op has a scope; every mutating op has a non-read scope;
hasScope(['read'], op.scope) correctly rejects 'admin' or 'write').
Plus the canonical filter contract: every localOnly: true op is
excluded from operations.filter(op => !op.localOnly). Plus targeted
handler-invocation cases for the two historically-broken HTTP-callable
classes: submit_job(name='shell', ctx.remote=true) MUST reject (F7b
HTTP MCP shell-job RCE class), and search_by_image(image_path,
ctx.remote=true) MUST reject (D18 P0 image-leak class). file_upload
and sync_brain are deliberately omitted from handler-invocation tests
because they're localOnly — calling their handlers directly tests an
impossible production path (codex CMT-3). All 7 localOnly ops are
snapshot-pinned by name to catch future flag-flips.
scripts/check-operations-filter-bypass.sh: greps src/ for any module
that imports the 'operations' value from core/operations.ts outside
the canonical filter site. Three import shapes detected: destructured,
aliased ('as ops'), namespace ('import * as'). Explicit allow-list of
10 known-safe importers with one-line rationale per entry. Plus a
filter-presence check on serve-http.ts that fails if the canonical
filter expression is refactored out. Codex /ship adversarial review
caught the original narrow regex missed aliased + namespace bypasses;
the expanded regex closes that class. Type-only imports of sibling
exports (sourceScopeOpts, OperationContext) are not flagged.
package.json: wires check:operations-filter-bypass into the verify
chain alongside check:jsonb and check:progress.
* refactor(cycle): export runPhaseLint+runPhaseBacklinks; add wrapper tests
src/core/cycle.ts: adds 'export' keyword to two existing phase
functions so behavioral tests can drive them without going through
runCycle's full setup cost. No body changes; no behavior change.
Documented as internal helpers exposed for test-only consumption —
downstream code should NOT take a dependency on them; existing
plan-eng-review D9 explicitly accepted the API-widening tax for
testability.
test/cycle-legacy-phases.test.ts (11 cases): combined file with two
describe blocks per plan D5 (DRY — shared setup, future phase
wrappers land as additional describes). Narrowed to result-mapping
+ error envelope per codex CMT-1 (legacy phases don't extend
BaseCyclePhase and don't take a progress reporter or AbortSignal
directly, so the contract surface is counter → status enum + try/catch
envelope). Cases: clean run → status='ok', partial fix → status='warn'
with dryRun in details, dry-run path doesn't write, throw-from-lib
→ status='fail' with envelope populated (no exception escape).
Verified runLintCore and runBacklinksCore both throw on missing dir,
so the throw-from-lib cases are deterministic.
* chore: bump version and changelog (v0.40.4.1)
E2E + unit test gap coverage wave. Closes 4 audit gaps with new
behavioral coverage (doctor orchestrator + subprocess smoke, operations
trust-boundary contract + filter-bypass guard, cycle phase wrapper
result-mapping). Verifies 3 audit gaps were already covered (ingestion
dedup/daemon/skillpack-load, phantom-redirect, ingestion test-harness).
Root-causes 2 pre-existing master flakes (gateway state leak, header-
transport cross-shard race). Files 5 follow-up TODOs from codex
adversarial-review findings.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* docs: note v0.40.4.1 doctor.buildChecks + cycle phase exports in CLAUDE.md
Adds three Key-files entries pinning the v0.40.4.1 test-wave additions:
- doctor.ts extension: buildChecks seam + behavioral tests (13+1 cases)
- cycle.ts extension: runPhaseLint + runPhaseBacklinks exports (11 cases)
- operations-trust-boundary contract + check-operations-filter-bypass.sh
Regenerates llms-full.txt to match (CLAUDE.md edits require build:llms per
project rule, otherwise test/build-llms.test.ts fails in CI shard 1).
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
* fix(tests): reset gateway in put_page write-through tests to skip embed in CI
CI failure mode: 9 tests in test/ingestion/put-page-write-through.test.ts
failed with `AIConfigError: [embed(zeroentropyai:zembed-1)] Unauthorized`
because put_page's handler at src/core/operations.ts:622 computes
`noEmbed = !isAvailable('embedding')`. When the gateway state has been
configured by a sibling test (or by the cli.ts module-load path reading
.env.testing) with a fake/stale ZEROENTROPY_API_KEY, isAvailable returns
true → put_page tries to embed → the real ZeroEntropy API returns 401.
Local dev passes because real ZE keys are present; CI doesn't have them.
Fix: call resetGateway() in beforeEach so isAvailable('embedding')
returns false → put_page's noEmbed path activates → no network call.
Also reset in afterAll to avoid leaking the cleared state to sibling
files in the same bun shard (the v0.40.4.1 gateway state-leak class
that motivated the earlier gateway.test.ts fix).
The test exercises write-through behavior, not embedding. No need for
a real or fake embed transport — bypass entirely.
* fix(tests): widen brain-writer partial-scan deadlines to absorb CI timing variance
CI failure: scanBrainSources partial-scan state > "hanging COUNT does not
exceed deadline — Promise.race timeout fires" failed once on a GitHub
Actions runner. The test asserted a 100ms deadline budget with a 500ms
bound; observed test duration was 187ms on CI (passes locally 20/20
runs at the original budget).
Root cause: Node.js timer drift under shard parallelism. The deadline
check at src/core/brain-writer.ts:503 uses strict `Date.now() > deadline`,
so when the setTimeout in Promise.race fires exactly at the boundary
(e.g. start+100ms when deadline is start+100ms), the post-await check
sees equality and skips the markRemainingSkipped branch. The test
also asserts elapsed < 500ms; CI overhead can push elapsed past that
bound when setTimeout drifts.
Fix: widen the deadline budget on both deadline-race tests proportionally
(keeps the same 2x ratio that proves "query exceeds deadline"). No
src/ changes — this is purely a test robustness widening.
- "hanging COUNT" test: 100ms → 500ms deadline, 500ms → 2500ms bound
- "slow COUNT" test: 50ms → 250ms deadline, 100ms → 500ms query delay
Verified locally: 20/20 stress runs at the widened budgets, no fails.
* fix(brain-writer): deadline check is >= not > (closes CI flake at boundary)
CI failure recurred: same "hanging COUNT does not exceed deadline" test
failed again at 588ms (past my previous 500ms deadline + 2500ms bound
widening). The root cause isn't test timing — it's an off-by-one in
the source.
src/core/brain-writer.ts had two deadline checks using strict `>`:
- line 445 (between-source abort)
- line 503 (post-COUNT-await re-check)
The Promise.race setTimeout resolves null at exactly `remainingMs` from
now, so post-await Date.now() OFTEN equals the deadline within
integer-ms precision. With `>`, the check skipped → scanOneSource ran
on the source whose budget had just been eaten → that source got
status='scanned' instead of 'skipped'. The test's `expect(firstSource
.status).toBe('skipped')` failed.
Fix: both checks now use `>=`. When Date.now() equals deadline exactly,
the budget IS exhausted — proceeding would let the next source eat its
own budget on top of what's already spent. Matches the boundary the
Promise.race's remainingMs <= 0 immediate-null path uses (line 481).
This is the real fix for the v0.40.x CI flakes; my earlier test-budget
widening papered over the symptom without closing the boundary. Kept
the wider 500ms deadline for headroom but added a comment pointing at
the operator fix as the load-bearing change.
Verified: 20/20 stress runs green locally after the operator fix.
---------
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
241 lines
9.6 KiB
TypeScript
241 lines
9.6 KiB
TypeScript
/**
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* put_page write-through tests (v0.38).
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*
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* Verifies that put_page writes the markdown file to disk alongside the
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* DB row when sync.repo_path is configured. Trust gating: subagent
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* sandbox writes stay DB-only; dry-run stays DB-only; missing-repo
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* stays DB-only.
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*/
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import { afterAll, afterEach, beforeAll, beforeEach, describe, expect, test } from 'bun:test';
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import * as fs from 'node:fs';
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import * as path from 'node:path';
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import * as os from 'node:os';
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import { PGLiteEngine } from '../../src/core/pglite-engine.ts';
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import { resetPgliteState } from '../helpers/reset-pglite.ts';
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import { operations } from '../../src/core/operations.ts';
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import type { OperationContext } from '../../src/core/operations.ts';
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import { resetGateway } from '../../src/core/ai/gateway.ts';
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let engine: PGLiteEngine;
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let tmpRoot: string;
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let brainDir: string;
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beforeAll(async () => {
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engine = new PGLiteEngine();
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await engine.connect({});
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await engine.initSchema();
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});
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afterAll(async () => {
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await engine.disconnect();
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// Don't leak the reset-state to sibling files in the same bun shard
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// (the v0.40.4.1 gateway state-leak class). beforeEach already reset
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// for our own tests; this is defense for the next file's siblings.
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resetGateway();
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});
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beforeEach(async () => {
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await resetPgliteState(engine);
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// CI fix: put_page's handler at src/core/operations.ts:622 computes
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// `noEmbed = !isAvailable('embedding')`. When the gateway has been
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// configured by a sibling test (or by the cli.ts module-load path
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// reading .env.testing) with a fake/stale ZEROENTROPY_API_KEY,
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// isAvailable returns true → put_page tries to embed → the real
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// ZeroEntropy API returns 401 in CI. This test exercises write-through
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// behavior, not embedding. Reset the gateway so isAvailable returns
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// false → noEmbed=true → no network call.
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resetGateway();
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tmpRoot = fs.mkdtempSync(path.join(os.tmpdir(), 'gbrain-wt-'));
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brainDir = path.join(tmpRoot, 'brain');
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fs.mkdirSync(brainDir, { recursive: true });
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// Wire sync.repo_path so write-through can find the repo.
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await engine.setConfig('sync.repo_path', brainDir);
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});
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afterEach(() => {
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fs.rmSync(tmpRoot, { recursive: true, force: true });
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});
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const captureLogger = () => {
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const messages: Array<{ level: string; msg: string }> = [];
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return {
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logger: {
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info: (msg: string) => messages.push({ level: 'info', msg }),
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warn: (msg: string) => messages.push({ level: 'warn', msg }),
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error: (msg: string) => messages.push({ level: 'error', msg }),
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},
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messages,
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};
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};
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function makeCtx(overrides: Partial<OperationContext> = {}): OperationContext {
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const { logger } = captureLogger();
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return {
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engine,
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config: { engine: 'pglite' as const },
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logger,
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dryRun: false,
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remote: false,
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sourceId: 'default',
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...overrides,
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};
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}
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const putPage = operations.find((o) => o.name === 'put_page')!;
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describe('put_page write-through — happy path', () => {
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test('writes the markdown file to disk at brainDir/<slug>.md', async () => {
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const ctx = makeCtx();
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const content = '---\ntitle: Test\n---\n\n# WT body';
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const result = (await putPage.handler(ctx, { slug: 'inbox/test-wt-1', content })) as {
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slug: string;
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write_through?: { written: boolean; path?: string };
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};
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expect(result.write_through?.written).toBe(true);
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const expectedPath = path.join(brainDir, 'inbox/test-wt-1.md');
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expect(result.write_through?.path).toBe(expectedPath);
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expect(fs.existsSync(expectedPath)).toBe(true);
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const onDisk = fs.readFileSync(expectedPath, 'utf8');
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expect(onDisk).toContain('WT body');
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});
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test('stamps provenance frontmatter (ingested_via=put_page for local CLI)', async () => {
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const ctx = makeCtx({ remote: false });
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const result = (await putPage.handler(ctx, {
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slug: 'inbox/provenance',
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content: '---\ntitle: P\n---\n\nbody',
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})) as { write_through?: { written: boolean; path?: string } };
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expect(result.write_through?.written).toBe(true);
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const onDisk = fs.readFileSync(result.write_through!.path!, 'utf8');
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expect(onDisk).toMatch(/ingested_via:\s*put_page/);
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expect(onDisk).toMatch(/ingested_at:/);
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});
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test('MCP/remote callers get ingested_via=mcp:put_page', async () => {
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const ctx = makeCtx({ remote: true });
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const result = (await putPage.handler(ctx, {
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slug: 'inbox/mcp-prov',
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content: '---\ntitle: Q\n---\n\nbody',
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})) as { write_through?: { written: boolean; path?: string } };
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expect(result.write_through?.written).toBe(true);
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const onDisk = fs.readFileSync(result.write_through!.path!, 'utf8');
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// YAML quotes strings containing `:` so the literal frontmatter line
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// is `ingested_via: 'mcp:put_page'`. Match the value substring.
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expect(onDisk).toMatch(/ingested_via:\s*['"]?mcp:put_page['"]?/);
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});
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});
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describe('put_page write-through — trust gating', () => {
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test('subagent sandbox write (viaSubagent without allowedSlugPrefixes) stays DB-only', async () => {
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const ctx = makeCtx({
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remote: true,
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viaSubagent: true,
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subagentId: 42,
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// No allowedSlugPrefixes — sandbox writes only.
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});
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const result = (await putPage.handler(ctx, {
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slug: 'wiki/agents/42/scratch',
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content: '---\ntitle: S\n---\n\nbody',
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})) as { write_through?: { written: boolean; skipped?: string } };
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expect(result.write_through?.written).toBe(false);
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expect(result.write_through?.skipped).toBe('subagent_sandbox');
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expect(fs.existsSync(path.join(brainDir, 'wiki/agents/42/scratch.md'))).toBe(false);
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});
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test('trusted-workspace subagent (viaSubagent + allowedSlugPrefixes) writes through', async () => {
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const ctx = makeCtx({
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remote: true,
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viaSubagent: true,
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subagentId: 7,
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allowedSlugPrefixes: ['wiki/personal/reflections/*'],
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});
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const result = (await putPage.handler(ctx, {
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slug: 'wiki/personal/reflections/note',
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content: '---\ntitle: R\n---\n\nreflection',
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})) as { write_through?: { written: boolean; path?: string } };
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expect(result.write_through?.written).toBe(true);
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expect(fs.existsSync(result.write_through!.path!)).toBe(true);
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});
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test('dry-run stays DB-only (early-return before importFromContent)', async () => {
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const ctx = makeCtx({ dryRun: true });
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const result = (await putPage.handler(ctx, {
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slug: 'inbox/dryrun',
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content: '---\ntitle: D\n---\n\nbody',
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})) as { dry_run?: boolean; write_through?: { skipped?: string } };
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// put_page's existing handler short-circuits on dry-run BEFORE
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// importFromContent, so write_through never fires. The legacy dry_run
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// contract is what callers see.
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expect(result.dry_run).toBe(true);
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expect(fs.existsSync(path.join(brainDir, 'inbox/dryrun.md'))).toBe(false);
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});
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});
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describe('put_page write-through — config edge cases', () => {
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test('repo not configured → skipped no_repo_configured', async () => {
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// No deleteConfig helper; remove via raw SQL.
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await engine.executeRaw("DELETE FROM config WHERE key = 'sync.repo_path'");
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const ctx = makeCtx();
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const result = (await putPage.handler(ctx, {
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slug: 'inbox/no-repo',
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content: '---\ntitle: N\n---\n\nbody',
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})) as { write_through?: { skipped?: string } };
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expect(result.write_through?.skipped).toBe('no_repo_configured');
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});
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test('repo path points at a missing directory → skipped repo_not_found', async () => {
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await engine.setConfig('sync.repo_path', path.join(tmpRoot, 'does-not-exist'));
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const ctx = makeCtx();
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const result = (await putPage.handler(ctx, {
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slug: 'inbox/missing-repo',
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content: '---\ntitle: M\n---\n\nbody',
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})) as { write_through?: { skipped?: string } };
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expect(result.write_through?.skipped).toBe('repo_not_found');
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});
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});
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describe('put_page write-through — multi-source filing', () => {
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test('non-default source lands at brainDir/.sources/<id>/<slug>.md', async () => {
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// Create a non-default source row first. Schema fields: id (PK),
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// name (UNIQUE), plus the v0.26.5 archive columns with defaults.
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await engine.executeRaw(
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"INSERT INTO sources (id, name) VALUES ('team-x', 'team-x')",
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);
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const ctx = makeCtx({ sourceId: 'team-x' });
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const result = (await putPage.handler(ctx, {
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slug: 'shared/page',
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content: '---\ntitle: X\n---\n\nbody',
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})) as { write_through?: { written: boolean; path?: string } };
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expect(result.write_through?.written).toBe(true);
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expect(result.write_through?.path).toBe(path.join(brainDir, '.sources/team-x/shared/page.md'));
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expect(fs.existsSync(result.write_through!.path!)).toBe(true);
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});
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});
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describe('put_page write-through — failure isolation', () => {
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test('disk-write failure does not roll back DB', async () => {
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// Point the config at a path that exists but isn't writable so the
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// write fails. Best portable trick: a regular file (writeFileSync to
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// a path inside a regular file fails with ENOTDIR).
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const blockFile = path.join(tmpRoot, 'block');
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fs.writeFileSync(blockFile, 'i am a file, not a dir');
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await engine.setConfig('sync.repo_path', blockFile);
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const ctx = makeCtx();
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const result = (await putPage.handler(ctx, {
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slug: 'inbox/fail-isolated',
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content: '---\ntitle: F\n---\n\nbody',
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})) as { write_through?: { skipped?: string; error?: string } };
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// Either skipped (existsSync sees a file, not a dir) or error during write.
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expect(
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result.write_through?.skipped === 'repo_not_found' ||
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typeof result.write_through?.error === 'string',
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).toBe(true);
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// DB write succeeded.
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const page = await engine.getPage('inbox/fail-isolated');
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expect(page).not.toBeNull();
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});
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});
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