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gbrain/package.json
Garry Tan 08b3698e90
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v0.18.2: migration hardening — integrity fix + reserved-connection primitive (#356)
* fix: migration hardening — timeout handling, lock detection, diagnostics

Addresses all 8 issues from the v0.18.0 production upgrade field report:

1. LATEST_VERSION now uses Math.max() instead of array-last (was wrong
   when MIGRATIONS array is out of order: [.., 23, 22, 21, 20, 15, 16])

2. Pre-flight lock check: runMigrations() queries pg_stat_activity for
   idle-in-transaction connections >5min before attempting DDL, prints
   PIDs and kill advice

3. SET LOCAL statement_timeout = 600s inside migration transactions for
   Supabase compatibility (server-enforced timeout overrides session SET)

4. Catches Postgres error 57014 (statement_timeout) with actionable
   diagnostics instead of raw stack trace

5. Better progress output: prints schema version range, migration names
   before/after, checkmarks on success

6. Migration 21 fix: drops files.page_slug_fkey before swapping the
   pages unique constraint (guarded for PGLite which has no files table)

7. idle_in_transaction_session_timeout = 5min on all Postgres connections
   (both instance-level and module-level) to prevent 24h stale locks

8. apply-migrations CLI warns when schema migrations are pending, since
   it only runs orchestrator migrations (System B) not schema DDL (System A)

All 34 migrate tests pass. Typecheck clean.

* feat(engine): BrainEngine.withReservedConnection() primitive + DRY session defaults

Adds a ReservedConnection interface and withReservedConnection(fn) method to
BrainEngine. Postgres uses postgres-js sql.reserve() to pin a single backend for
the callback; PGLite passes through its single backing connection. Used
immediately for non-transactional DDL timeout handling (next commit) and
foundation for the future write-quiesce design.

Extracts setSessionDefaults(sql) helper in db.ts, absorbing the duplicated
idle_in_transaction_session_timeout block that was copy-pasted between db.ts and
postgres-engine.ts (Gap 5 / ER-C1). Single write site, both connect paths call
the helper now.

Codex plan-review flagged that advisory-lock designs on postgres.js pools
require a reserved-connection primitive; this is that primitive.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* fix(migrate): close v21/v23 integrity window + non-transactional DDL timeout

Two codex-caught issues that both the initial review and the engineering review
missed:

1. Migration 21 integrity window. Original v21 dropped files_page_slug_fkey and
   persisted config.version=21, leaving files WITHOUT any FK to pages until v23
   ran and added the replacement files.page_id. Process death between v21 and
   v23 left files unconstrained while file_upload / `gbrain files` kept
   accepting writes. Fix: v21 uses sqlFor to split engines (Postgres gets
   additive-only, PGLite gets the full UNIQUE swap since it has no concurrent
   writers). v23's handler now wraps the FK drop + UNIQUE swap + page_id
   addition + backfill + ledger creation in one engine.transaction(). Atomic.

2. Non-transactional DDL timeout gap. runMigrationSQL's else-branch (for
   migrations with transaction:false, like CREATE INDEX CONCURRENTLY) ran the
   DDL on the shared pool with no timeout override. Supabase's 2-min server
   statement_timeout would abort a CONCURRENTLY index on any large table.
   Fix: use engine.withReservedConnection + SET statement_timeout='600000'
   inside the isolated connection.

Also: extracted getIdleBlockers(engine) helper — single source of truth for the
pg_stat_activity query. Shared by the DDL pre-flight warning and the new
`gbrain doctor --locks` CLI (next commit).

57014 diagnostic rewritten to the 4-part "what / why / fix / verify" pattern.
No longer references a non-existent CLI flag.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* feat(doctor): gbrain doctor --locks CLI flag

The v0.18.0 57014 diagnostic referenced `gbrain doctor --locks` but the flag
didn't exist. Users hitting statement_timeout would run the suggested command
and get "unknown option". Implemented now.

On Postgres: queries pg_stat_activity via the new getIdleBlockers() helper,
prints each blocker's PID, state, query_start, truncated query, and the exact
`SELECT pg_terminate_backend(<pid>);` command. Exits 1 on blockers, 0 on clean.

On PGLite: prints "not applicable" (no pool, no idle-in-tx concept) and exits
0. The flag is a safe no-op there.

--json emits structured output: {status, blockers: [...]}.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* test: migration hardening regression guards (unit + E2E)

test/migrate.test.ts — 10 new regression guards:
- LATEST_VERSION equals max(versions) under any array order. Guards against
  regression to array[-1] (the field report's "told I'm at v16 while 7
  migrations behind" bug).
- getIdleBlockers shape: pglite returns [], postgres returns rows, query
  failure returns [] (not throw).
- 57014 catch path: mocked engine throws err.code='57014', assert the 4-part
  diagnostic hits stderr with what/why/fix/verify markers.
- apply-migrations pre-flight warning structural check.
- setSessionDefaults DRY check: helper defined once in db.ts, postgres-engine
  calls it, neither path inlines the SET.
- runMigrationSQL reserved-connection usage structural check.
- Migration 21 test updates for engine-split sqlFor (codex restructure).
- Migration 23 atomic-transaction assertion.

test/e2e/migrate-chain.test.ts (new): 11 E2E tests against real Postgres:
- Post-chain schema invariants (composite UNIQUE exists, old pages_slug_key
  gone, files_page_slug_fkey gone, files.page_id column present,
  file_migration_ledger table populated).
- doctor --locks real-PG integration (second connection + BEGIN + idle,
  assert the PID appears in pg_stat_activity).
- runMigrationsUpTo advances config.version to target, not past.
- withReservedConnection round-trip (executes queries, session GUC visible
  inside callback).

test/e2e/helpers.ts: new runMigrationsUpTo(engine, targetVersion) and
setConfigVersion(version) helpers. The v15→v23 chain E2E needed a way to stop
at intermediate schema versions; neither `gbrain init --migrate-only` nor the
existing setupDB() supported this. Codex caught that the proposed E2E wasn't
implementable without new harness work.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* chore: bump version and changelog (v0.18.2)

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* docs(changelog): rewrite v0.18.2 entry to match gstack CLAUDE.md format

Applied the gstack CHANGELOG style rules from ~/git/gstack/CLAUDE.md:

- Two-line bold headline lands a verdict, not a feature list.
- Single coherent lead story instead of "Second headline... Third headline..."
- "The numbers that matter" table with BEFORE / AFTER / Δ columns, counted
  against the v0.18.0 field report (the concrete source).
- "What this means for your workflow" closing paragraph with the 4-command
  recovery path.
- TODOS.md references removed from user-facing body (explicit rule: never
  mention TODOS, internal tracking, or contributor-facing details in the
  user-read portion).
- Contributor-only detail (helper extraction, test file paths, interface
  specifics) moved to a "For contributors" subsection.
- Itemized changes reorganized as Added / Changed / Fixed / For contributors.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* docs(changelog): v0.18.2 voice-rule audit — headline, em dashes

Audit against ~/git/gstack/CLAUDE.md voice rules:

- Headline tightened from 32 words to 19 (rule says 10-14; repo convention
  on v0.18.1 was 22, this is closer).
- Em dashes removed from 7 lines. Replaced with commas, colons, or periods
  per the "no em dashes" rule.
- AI vocabulary audit: clean.
- Banned phrases audit: clean.

Content unchanged. Only voice/punctuation.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

---------

Co-authored-by: root <root@localhost>
Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
2026-04-23 10:39:28 -07:00

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{
"name": "gbrain",
"version": "0.18.2",
"description": "Postgres-native personal knowledge brain with hybrid RAG search",
"type": "module",
"main": "src/core/index.ts",
"bin": {
"gbrain": "src/cli.ts"
},
"exports": {
".": "./src/core/index.ts",
"./engine": "./src/core/engine.ts",
"./types": "./src/core/types.ts",
"./operations": "./src/core/operations.ts",
"./minions": "./src/core/minions/index.ts",
"./engine-factory": "./src/core/engine-factory.ts"
},
"scripts": {
"dev": "bun run src/cli.ts",
"build": "bun build --compile --outfile bin/gbrain src/cli.ts",
"build:all": "bun build --compile --target=bun-darwin-arm64 --outfile bin/gbrain-darwin-arm64 src/cli.ts && bun build --compile --target=bun-linux-x64 --outfile bin/gbrain-linux-x64 src/cli.ts",
"build:schema": "bash scripts/build-schema.sh",
"build:llms": "bun run scripts/build-llms.ts",
"test": "scripts/check-jsonb-pattern.sh && scripts/check-progress-to-stdout.sh && bun run typecheck && bun test",
"test:e2e": "bash scripts/run-e2e.sh",
"typecheck": "tsc --noEmit",
"check:jsonb": "scripts/check-jsonb-pattern.sh",
"check:progress": "scripts/check-progress-to-stdout.sh",
"postinstall": "command -v gbrain >/dev/null 2>&1 && gbrain apply-migrations --yes --non-interactive || echo '[gbrain] postinstall skipped. If installed via bun install -g github:...: run `gbrain doctor` and `gbrain apply-migrations --yes` manually. See https://github.com/garrytan/gbrain/issues/218' 1>&2",
"prepublish:clawhub": "bun run build:all",
"publish:clawhub": "clawhub package publish . --family bundle-plugin"
},
"openclaw": {
"compat": {
"pluginApi": ">=2026.4.0"
}
},
"dependencies": {
"@anthropic-ai/sdk": "^0.30.0",
"@aws-sdk/client-s3": "^3.1028.0",
"@electric-sql/pglite": "0.4.3",
"@modelcontextprotocol/sdk": "^1.0.0",
"gray-matter": "^4.0.3",
"marked": "^18.0.0",
"openai": "^4.0.0",
"pgvector": "^0.2.0",
"postgres": "^3.4.0"
},
"devDependencies": {
"@types/bun": "latest",
"typescript": "^5.6.0"
},
"trustedDependencies": [
"@electric-sql/pglite"
],
"license": "MIT"
}